dcsimg

Import Log for NMNH type specimens

  • Started: November 23, 2021 17:01
  • Completed: 00:55:33
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 21:42:08 (infos) Importing data from publish_metadata_chunk_4.csv
  • 21:33:00 (infos) Importing data from publish_metadata_chunk_3.csv
  • 21:25:56 (infos) Importing data from publish_metadata_chunk_2.csv
  • 21:20:51 (infos) Importing data from publish_metadata_chunk_1.csv
  • 21:20:33 (infos) adding new metadata
  • 21:17:53 (infos) Importing data from publish_traits_chunk_20.csv
  • 21:14:50 (infos) Importing data from publish_traits_chunk_19.csv
  • 20:34:28 (infos) Importing data from publish_traits_chunk_18.csv
  • 19:55:51 (infos) Importing data from publish_traits_chunk_17.csv
  • 19:19:13 (infos) Importing data from publish_traits_chunk_16.csv
  • 18:44:36 (infos) Importing data from publish_traits_chunk_15.csv
  • 18:11:56 (infos) Importing data from publish_traits_chunk_14.csv
  • 17:41:12 (infos) Importing data from publish_traits_chunk_13.csv
  • 17:12:30 (infos) Importing data from publish_traits_chunk_12.csv
  • 16:46:19 (infos) Importing data from publish_traits_chunk_11.csv
  • 16:22:16 (infos) Importing data from publish_traits_chunk_10.csv
  • 15:59:41 (infos) Importing data from publish_traits_chunk_9.csv
  • 15:39:24 (infos) Importing data from publish_traits_chunk_8.csv
  • 15:20:55 (infos) Importing data from publish_traits_chunk_7.csv
  • 15:03:14 (infos) Importing data from publish_traits_chunk_6.csv
  • 14:48:17 (infos) Importing data from publish_traits_chunk_5.csv
  • 14:35:26 (infos) Importing data from publish_traits_chunk_4.csv
  • 14:24:41 (infos) Importing data from publish_traits_chunk_3.csv
  • 14:15:08 (infos) Importing data from publish_traits_chunk_2.csv
  • 14:08:26 (infos) Importing data from publish_traits_chunk_1.csv
  • 14:08:25 (infos) adding new traits
  • 14:01:42 (infos) removing all traits
  • 14:00:48 (infos) polling for trait diff metadata: /resources/520/publish_diffs.json
  • 14:00:48 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 19:25:46 (ends) Complete
  • 19:25:46 (ends) TOTAL TIME: 2.4h
  • 19:25:46 (starts) TraitBank::Denormalizer.update_resource_vernaculars
  • 19:25:40 (starts) Resource#fix_native_nodes
  • 19:25:40 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:545:in `merge_triple' << /app/lib/trait_bank/slurp.rb:432:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:432:in `each' << /app/lib/trait_bank/slurp.rb:432:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:329:in `block (2 levels) in load_csv'
  • 19:23:23 (infos) Importing data from publish_traits_chunk_10.csv
  • 19:00:46 (infos) Importing data from publish_traits_chunk_9.csv
  • 18:40:04 (infos) Importing data from publish_traits_chunk_8.csv
  • 18:21:24 (infos) Importing data from publish_traits_chunk_7.csv
  • 18:04:04 (infos) Importing data from publish_traits_chunk_6.csv
  • 17:49:40 (warns) FAILED on build_nodes query (Trait), will re-try once...
  • 17:49:40 (warns) The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout.
  • 17:48:15 (infos) Importing data from publish_traits_chunk_5.csv
  • 17:35:34 (infos) Importing data from publish_traits_chunk_4.csv
  • 17:24:56 (infos) Importing data from publish_traits_chunk_3.csv
  • 17:15:38 (infos) Importing data from publish_traits_chunk_2.csv
  • 17:08:59 (infos) Importing data from publish_traits_chunk_1.csv
  • 17:08:54 (infos) adding new traits
  • 17:08:53 (infos) removing all traits
  • 17:07:46 (infos) polling for trait diff metadata: /resources/520/publish_diffs.json
  • 17:07:46 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo