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Pseudonocardiaceae

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The Pseudonocardiaceae are a family of bacteria in the order Actinomycetales and the only member of the suborder Pseudonocardineae.

Genomics

The species within the Pseudonocardiaceae family form a distinct clade in phylogenetic trees based on concatenated protein sequences. Additionally, Nakamurella multipartite, currently part of the order Frankiales, also formed a clade with the Pseudonocardiaceae species in 100% of the bootstrap replications of the phylogenetic trees. A conserved signature indel has been identified which is found in N. multipartite and all but one of the Pseudonocardiaceae species. This one-amino-acid insertion in UMP kinase serves to both provide a molecular marker for nearly all of the Pseudonocardiaceae and suggests N. multipartite is closely related to this group. Some evidence also suggests the orders Pseudonocardiales and Corynebacteriales are closely related. Several conserved signature indels have been identified which are found in both Pseudonocardiales and Corynebacteriales, including a three-amino-acid insertion in a conserved region of UDP-galactopyranose mutase. This insertion is also present in N. multipartite and Geodermatophilus obscurus, another member of Frankiales. Additionally, five conserved signature proteins have been identified which are found only in the Pseudonocardiales and Corynebacteriales orders. Homologs of the proteins are generally found in N. multipartite and G. obscurus, providing additional evidence of these two species being closely related to the orders Pseudonocardiales and Corynebacteriales.[1]

Phylogeny

The phylogeny is based on 16S rRNA-based LTP release 123 by 'The All-Species Living Tree' Project.[2]

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Thermotunica guangxiensis Wu et al. 2014

         

Crossiella Labeda 2001

     

Goodfellowiella coeruleoviolacea (Preobrazhenskaya & Terekhova 1987) Labeda et al. 2008

   

Actinoalloteichus Tamura et al. 2000

         

Kutzneria Stackebrandt et al. 1994

     

Umezawaea tangerina (Kinoshita et al. 2000) Labeda and Kroppenstedt 2007

     

Actinokineospora Hasegawa 1988 emend. Labeda et al. 2010 [incl. Alloactinosynnema]

       

Lechevalieria species-group 2

     

Lechevalieria fradiae Zhang et al. 2007

   

Lentzea Yassin et al. 1995 emend. Labeda et al. 2001

         

Lechevalieria nigeriaca Camas et al. 2013

       

Lechevalieria flava (Gauze et al. 1974) Labeda et al. 2001

     

Lechevalieria (Labeda 1986) Labeda et al. 2001

   

Allokutzneria Labeda & Kroppenstedt 2008

         

Actinosynnema Hasegawa, Lechevalier & Lechevalier 1978

   

Saccharothrix Labeda et al. 1984 emend. Labeda and Lechevalier 1989

                     

Streptoalloteichus (ex Tomita et al. 1978) Tomita et al. 1987 emend. Tamura et al. 2008

     

Actinokineospora soli Tang et al. 2012

       

Kibdelosporangium Shearer et al. 1986

     

Labedaea rhizosphaerae Lee 2012

     

Longimycelium tulufanense Xia et al. 2013

     

Actinomycetospora Jiang et al. 2008 emend. Tamura et al. 2011

   

Pseudonocardia Henssen 1957 emend. Park et al. 2008 [incl. Actinomycetospora]

             

Actinophytocola Indananda et al. 2010

       

Saccharopolyspora cebuensis Pimentel-Elardo, Tiro & Hentschel 2008

     

Saccharopolyspora species-group 2

     

Saccharopolyspora Lacey and Goodfellow 1975 emend. Korn-Wendisch et al. 1989

     

Saccharopolyspora species-group 3

     

Saccharopolyspora rectivirgula (Krasil'nikov & Agre 1964) Korn-Wendisch et al. 1989

     

Halopolyspora alba Lai et al. 2014

   

Actinopolyspora Gochnauer et al. 1975 emend. Tang et al. 2011

                 

Amycolatopsis Lechevalier et al. 1986 emend. Tang et al. 2010

       

Saccharomonospora Nonomura & Ohara 1971 [incl. Micropolyspora internatus & Prauserella shujinwangii]

   

Prauserella Kim & Goodfellow 1999 emend. Li et al. 2003

       

Amycolatopsis species-group 2

     

Sciscionella marina Tian et al. 2009

     

Yuhushiella deserti Mao et al. 2011

     

Haloechinothrix alba Tang et al. 2010

   

Thermocrispum Korn-Wendisch et al. 1995

                           

Taxonomy

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature [3] and National Center for Biotechnology Information [4]

Notes:
♠ Strains found at the National Center for Biotechnology Information, but not listed in the List of Prokaryotic names with Standing in Nomenclature

References

  1. ^ Gao, B.; Gupta, R. S. (2012). "Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria". Microbiology and Molecular Biology Reviews. 76 (1): 66–112. doi:10.1128/MMBR.05011-11. PMC 3294427. PMID 22390973..mw-parser-output cite.citation{font-style:inherit}.mw-parser-output q{quotes:"""""'"'"}.mw-parser-output code.cs1-code{color:inherit;background:inherit;border:inherit;padding:inherit}.mw-parser-output .cs1-lock-free a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/6/65/Lock-green.svg/9px-Lock-green.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .cs1-lock-limited a,.mw-parser-output .cs1-lock-registration a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Lock-gray-alt-2.svg/9px-Lock-gray-alt-2.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .cs1-lock-subscription a{background:url("//upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Lock-red-alt-2.svg/9px-Lock-red-alt-2.svg.png")no-repeat;background-position:right .1em center}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration{color:#555}.mw-parser-output .cs1-subscription span,.mw-parser-output .cs1-registration span{border-bottom:1px dotted;cursor:help}.mw-parser-output .cs1-hidden-error{display:none;font-size:100%}.mw-parser-output .cs1-visible-error{font-size:100%}.mw-parser-output .cs1-subscription,.mw-parser-output .cs1-registration,.mw-parser-output .cs1-format{font-size:95%}.mw-parser-output .cs1-kern-left,.mw-parser-output .cs1-kern-wl-left{padding-left:0.2em}.mw-parser-output .cs1-kern-right,.mw-parser-output .cs1-kern-wl-right{padding-right:0.2em}
  2. ^ 'The All-Species Living Tree' Project."16S rRNA-based LTP release 123 (full tree)" (PDF). Silva Comprehensive Ribosomal RNA Database. Retrieved 2016-03-20.
  3. ^ J.P. Euzéby. "Pseudonocardiaceae". List of Prokaryotic names with Standing in Nomenclature. Retrieved 2016-03-20.
  4. ^ Sayers; et al. "Pseudonocardiaceae". National Center for Biotechnology Information taxonomy database. Retrieved 2016-03-20.
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Pseudonocardiaceae: Brief Summary

provided by wikipedia EN

The Pseudonocardiaceae are a family of bacteria in the order Actinomycetales and the only member of the suborder Pseudonocardineae.

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cc-by-sa-3.0
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Wikipedia authors and editors
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visit source
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wikipedia EN