Molecular Biology and Genetics

Molecular Biology

Statistics of barcoding coverage

Barcode of Life Data Systems (BOLD) Stats
                                        
Specimen Records:262Public Records:39
Specimens with Sequences:142Public Species:17
Specimens with Barcodes:138Public BINs:16
Species:53         
Species With Barcodes:44         
          
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Barcode data

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Locations of barcode samples

Collection Sites: world map showing specimen collection locations for Estrildidae

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Estrildid finch

The estrildid finches are small passerine birds of the Old World tropics and Australasia. They can be classified as the family Estrildidae (weaver-finch), or as a subfamily within the family Passeridae, which strictly defined comprises the Old World sparrows.[1]

They are gregarious and often colonial seed-eaters with short, thick, but pointed bills. They are all similar in structure and habits, but vary widely in plumage colours and patterns.

All the estrildids build large, domed nests and lay 5–10 white eggs. Many species build roost nests. Some of the fire-finches and pytilias are hosts to the brood-parasitic indigobirds and whydahs, respectively.

Most are sensitive to cold and require warm, usually tropical, habitats, although a few have adapted to the cooler climates of southern Australia.

The smallest species of the family is the Shelley's Oliveback (Nesocharis shelleyi) at a mere 8.3 centimetres (3.3 in), although the lightest species is the Black-rumped Waxbill (Estrilda troglodytes) at 6 g (0.21 oz). The largest species is the Java Sparrow (Padda oryzivora), at 17 cm (6.7 in) and 25 g (0.88 oz).

Contents

Species list

Evolution

Origin of estrildid finches

The phylogeography and possible origin of estrildid finches have been studied. The following scheme may be useful to represent an hypothetical origin in India in the last and stronger Himalayas uplift (16.5 million years ago),when monsoon rains regime established in India (see figure). The conclusions from this study[2][3] are:

  • Estrildids are a monophyletic group with polytomies that may have started evolving by Middle Miocene Epoch (about 16.5 million years ago)
  • This proposed timing is coincidental with the Fringillinae finches’ radiation starting time and also with the biggest Himalayan and Tibetan Plateau uplift, triggered by the Indian tectonic plate strongest collision; this established present day southern Asia monsoon regime and other drastic climatic changes, like a dryer weather in Tibetan Plateau and China deserts.
  • The Estrildid finches form a monophyletic group which includes several polytomies and comprises African, Asian and Australian birds.
  • The most ancient evolutive group comprises African (African silverbill), Asian (Indian silverbill) and Australian (diamond firetail); this suggests that the whole Estrildids radiation might have originated around India.[2][4][5]
Estrildid finches' phylogenetic tree

References

  1. ^ Christidis L, Boles WE (2008). Systematics and Taxonomy of Australian Birds. Canberra: CSIRO Publishing. p. 177. ISBN 978-0-643-06511-6. 
  2. ^ a b c Arnaiz-Villena,A; Ruiz-del-Valle,V.; Gomez-Prieto,P.; Reguera,R.; Parga-Lozano,C; Serrano-Vela,J.I. (2009). "Estrildinae Finches (Aves, Passeriformes) from Africa, South Asia and Australia: a Molecular Phylogeographic Study"(PDF). The Open Ornithology Journal 2: 29-36. (doi:10.2174/1874453200902010029).
  3. ^ Arnaiz-Villena, A; Gómez-Prieto P, Ruiz-de-Valle V (2009). "Phylogeography of finches and sparrows". Nova Science Publishers. ISBN 978-1-60741-844--3. 
  4. ^ Sibley CG, Monroe BL (1990). Distribution and Taxonomy of Birds of the World. Yale University Press
  5. ^ a b Arnaiz-Villena,A; Gomez-Prieto,P.; Serna-Ayala; Ruiz-del-Valle,V. (2009). "Origen de los estríldidos".
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Red-browed Finch

The Red-browed Finch Neochmia temporalis is an estrildid finch that inhabits the east coast of Australia. This species has also been introduced to French Polynesia for breeding. It is commonly found in temperate forest and dry savanna habitats. It may also be found in dry forest and mangrove habitats in tropical region.

The species is distinguished by the bright red stripe above the eye, and bright red rump. The rest of the body is grey, with olive wing coverts and collar. Juveniles do not have red brow marks, and lack olive colouration on the collar and wing coverts. The adults are 11–12 cm long.[2]

Contents

Taxonomy

At Bunya Mountains National Park, Queensland, Australia

The Red-browed Finch is one of four species in the genus Neochmia. Alternate names include Red-browed Firetail.[3]

There are three noted subspecies: the nominate species N. temporalis temporalis, in most of the east coast, and inland New South Wales and Victoria; N. temporalis minor, which is distinguished by a white breast, in northern Queensland, and south-east of Australia, and N. temporalis loftyi in the south west corner of South Australia, although the latter is sometimes not listed as a subspecies, as the differences between it and the type species are relatively minor.[2]

Conservation status

The finch is common in the south east of its range, from Brisbane to Melbourne . Subspecies N. minor is common between Cooktown and Townsville.[2] The species is listed as "Least Concern" on the IUCN red list.[1][4] There are no key threatening processes for N. temporalis, although the Pest Animal Control CRC suggests that the introduced Nutmeg Mannikin (Lonchura punctulata), which currently threatens some native Mannikins through increased competition, may be a minor threat to N. lateralis in northern Queensland.[5]

In regional areas the species needs adequate shrub density to provide cover and foraging places. The species has been noted to decline or even disappear in areas that have been cleared or grazed, especially in combination with drought.[6]

Biology and Ecology

The Red-browed Finch is highly sociable, and is usually seen in small flocks of 10 to 20 individuals. Flocks are sedentary or nomadic in their local area. Flocks prefer semi-open woodland, especially edges of forests, where brushy scrub meets cleared areas, especially near creeks..

The finch makes short, piping high-pitched cheeps. When disturbed, the whole flock will disperse, cheeping, and re-congregate near-by.

N. temporalis is a seed eater, living mostly on grass and sedge seed, but will happily feed on many non-native seeds. Wild birds will even enter large-mesh aviaries in suburban areas to eat seed, given the opportunity.[7]

The Red Browed Finch, like other weaver finches, builds a large domed nest, with a side entrance, out of grass and small twigs. Nests are usually built 2–3 meters above the ground in dense shrubs. Nesting is communal. Both parents share nest building, incubation of the eggs, and feed the young together.[8] 4-6 white eggs are laid per clutch 2-3 times per year, between October and April. Juveniles are fully independent within 28 days.[9]

Red Browed Finches are common aviary birds. The Red Browed Finch will sometimes hybridise with the Star Finch, Crimson Finch, and Zebra Finch if kept together in captivity.[10]

Origin

Origin and phylogeny has been obtained by Antonio Arnaiz-Villena et al.[11] Estrildinae may have originated in India and dispersed thereafter (towards Africa and Pacific Ocean habitats).

References

  1. ^ a b BirdLife International (2012). "Neochmia temporalis". IUCN Red List of Threatened Species. Version 2012.1. International Union for Conservation of Nature. http://www.iucnredlist.org/apps/redlist/details/106008674. Retrieved 16 July 2012.
  2. ^ a b c Morcombe, Michael K. (2003). Field guide to Australian birds (Compact ed. ed.). Archerfield, Qld: Steve Parish Publishing.
  3. ^ Birds Australia (19 February 2007). "Bird Finder: Red-browed Finch". Birds in Backyards. Sydney: Australian Museum. http://birdsinbackyards.net/species/Neochmia-temporalis. Retrieved 8 October 2011.
  4. ^ Butchart, Stuart; Jonathan Ekstrom, Matt Harding (2009). "Species factsheet: Neochmia temporalis". BirdLife. http://www.birdlife.org/datazone/species/index.html?action=SpcHTMDetails.asp&sid=8674&m=0. Retrieved 2010-04-22.
  5. ^ Norris, Andrew; Tim Low, Iain Gordon, Glen Saunders, Steven Lapidge, Keryn Lapidge, Tony Peacock, Roger Pech (2005-06). "Review of the management of feral animals and their impact on biodiversity in the Rangelands". Pest Animal Control CRC. http://www.feral.org.au/feral_documents/Rangelands.pdf.
  6. ^ Ford, Hugh A.; Geoffrey W. Barrett, Denis A. Saunders, Harry F. Recher (2001-01). "Why have birds in the woodlands of Southern Australia declined?". Biological Conservation 97 (1): 71–88. doi:10.1016/S0006-3207(00)00101-4. ISSN 0006-3207. http://www.sciencedirect.com/science/article/B6V5X-415324B-R/2/dd257c939acf7bf84c35ffe4a5d7ad3d. Retrieved 2010-04-22.
  7. ^ Todd, M. K. (1996). "Diet and Foraging Behaviour of Red-browed Finches Neochmia temporalis Near Newcastle, New South Wales". Emu 96 (4): 245. doi:10.1071/MU9960245. ISSN 0158-4197.
  8. ^ Birds in Backyards (2007-02-19). "Red-browed Finch (Neochmia temporalis) Fact sheet". BirdsinBackyards.net. http://birdsinbackyards.net/species/Neochmia-temporalis. Retrieved 2010-04-23.
  9. ^ BirdCare (2008-01-29). "Red browed Finch or Aegintha temporalis". BirdCare.com.au. http://www.birdcare.com.au/red_browed_finch.htm. Retrieved 2010-04-23.
  10. ^ DEWHA (2010-12-02). "Neochmia ruficauda clarescens". Species Profile and Threats Database. Canberra: Department of the Environment, Water, Heritage and the Arts. http://www.environment.gov.au/cgi-bin/sprat/public/publicspecies.pl?taxon_id=67118. Retrieved 2010-04-23.
  11. ^ Arnaiz-Villena, A; Ruiz-del-Valle V, Gomez-Prieto P, Reguera R, Parga-Lozano C, Serrano-Vela I (2009). "Estrildinae Finches (Aves, Passeriformes) from Africa, South Asia and Australia: a Molecular Phylogeographic Study". The Open Ornithology Journal 2: 29–36. doi:10.2174/1874453200902010029. http://chopo.pntic.mec.es/biolmol/publicaciones/Estrildinae_finches_2009.pdf.
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