There are currently 2 recognized species in this genus:
- Prokofiev, A.M. & Golubtsov, A.S. (2013): Revision of the loach genus Afronemacheilus (Teleostei: Balitoridae: Nemacheilinae) with description of a new species from the Omo-Turkana basin, Ethiopia. Ichthyological Exploration of Freshwaters, 24 (1): 1-14.
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