Molecular Biology and Genetics

Molecular Biology

Statistics of barcoding coverage

Barcode of Life Data Systems (BOLD) Stats
                                        
Specimen Records:208Public Records:28
Specimens with Sequences:144Public Species:11
Specimens with Barcodes:133Public BINs:6
Species:24         
Species With Barcodes:21         
          
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Locations of barcode samples

Collection Sites: world map showing specimen collection locations for Ambystoma

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Mole salamander

The mole salamanders (genus Ambystoma) are a group of salamanders endemic to North America, the only genus in the family Ambystomatidae. The group has become famous due to the presence of the axolotl (A. mexicanum), widely used in research, and the tiger salamander (A. tigrinum, A. mavortium) which is the official amphibian of many states, and often sold as a pet.

General description[edit]

Ambystoma kansensis (Adams 1929) fossil

Terrestrial mole salamanders are identified by having wide, protruding eyes, prominent costal grooves, thick arms, and rounded tails. Most have vivid patterning on dark backgrounds, with marks ranging from deep blue spots to large yellow bars depending on the species. Terrestrial adults spend most of their lives underground in burrows, either of their own making or abandoned by other animals. Some northern species may hibernate in these burrows throughout the winter. They live alone and feed on any available invertebrate. Adults spend little time in the water, only returning to the ponds of their birth to breed.

All mole salamanders are oviparous and lay large eggs in clumps in the water. Their fully aquatic larvae are branchiate, with three pairs of external gills behind their heads and above their gill slits. Larvae have large caudal fins, which extend from the back of their heads to their tails and to their cloacae. Larvae grow limbs soon after hatching, with four toes on the fore arms, and five toes on the hind legs. Their eyes are wide-set and lack true eyelids.

The larvae of some species (especially those in the south, and tiger salamanders) can reach their adult size before undergoing metamorphosis. During metamorphosis, the gills of the larvae disappear, as do the fins. Their tails, skin, and limbs become thicker, and the eyes develop lids. Their lungs become fully developed, allowing for a fully terrestrial existence.

Tiger salamander complex[edit]

The presence of neotenic populations near those with large larvae has made it difficult to identify mole salamander species. The tiger salamander complex used to be considered a single species ranging from Canada to Mexico, falling under the name A. tigrinum. Despite differences in coloration and larvae, tiger salamanders were found throughout their unbroken range, which made it difficult to delineate subspecies, let alone elevate any populations to species status. In morphological terms, tiger salamanders are all very similar, with large heads, small eyes, and thick bodies. This is probably because tiger salamanders have the primitive morphology of mole salamanders. They are also the largest of the mole salamanders, and have very large larvae. All populations have similar lifestyles, and their lifecycles are identical. However, when one looks at tiger salamander populations distant from each other, different species within this complex become apparent. The ranges of these potential species overlap, and hybridization occurs, blurring the lines between species.

Several subspecies of A. tigrinum were named to deal with this problem. Recently, the barred tiger salamander (A. mavortium) was elevated to species status—covering the tiger salamander populations in the western and central United States. Several distinct subspecies still exist in A. mavortium, which may be elevated to species status at some point in the future. The California tiger salamander (A. californiense) has also been elevated out of A. tigrinum, and is actually very distantly related to all other mole salamander species. The Plateau tiger salamander (A. velasci) was elevated out of A. tigrinum through genetic analysis in 1997. All accounts referring to the axolotl (A. mexicanum) as a close relative of A. tigrinum are now considered wrong, as they are now separated by both geography and many species between. Instead, it is A. velasci, which shares the axolotl's habitat, and is probably closely related to it. The Plateau tiger salamander was probably the parent of most of the neotenic species, which raises the possibility that A. velasci is paraphyletic, and may be broken up into more species in the future.

Hybrid all-female populations[edit]

Unisexual (all-female) populations of ambystomatid salamanders are widely distributed across the Great Lakes region and northeastern North America. The females require sperm from a co-occurring, related species to fertilize their eggs and initiate development. Usually[1] the eggs then discard the sperm genome and develop asexually (i.e., gynogenesis, with premeiotic doubling); however, they may incorporate the genome from the sperm into the resulting offspring.[2] Sperm incorporation commonly[1] takes the form of genome addition (resulting in ploidy elevation in the offspring), or genome replacement, wherein one of the maternal genomes is discarded. This unique mode of reproduction has been termed kleptogenesis by Bogart and colleagues.[2] This is in contrast to hybridogenesis, where the maternal genomes are passed hemiclonally and the paternal genome is discarded every generation before the egg matures and reacquired from the sperm of another species.

The nuclear DNA of the unisexuals generally comprises genomes from up to five species:[3] the blue-spotted salamander (A. laterale), Jefferson salamander (A. jeffersonianum), small-mouthed salamander (A. texanum), streamside salamander (A. barbouri), and tiger salamander (A. tigrinum), denoted respectively as L, J, T, B, and Ti. This flexibility results in a large number of possible nuclear biotypes (genome combinations) in the unisexuals. For example, an LJJ individual would be a triploid with one A. laterale genome and two A. jeffersonianum genomes, while an LTJTi individual would be a tetraploid with genomes from four species. Because they have hybrid genomes, unisexual salamanders are a cryptic species with morphology similar to coexisting species. For example, LLJs look like blue-spotted salamanders and LJJs look like Jefferson salamanders. Silvery salamanders LJJ (A. platineum), Tremblay's salamanders LLJ (A. tremblayi), and Kelly's Island salamanders LTT and LTTi (A. nothagenes) were initially described as species. Species names were later dropped for all unisexual salamanders because of the complexity of their genomes. The offspring of a single mother may have different genome complements;[2] for example, a single egg mass may have both LLJJ and LJJ larvae.

Despite the complexity of the nuclear genome, all unisexuals form a monophyletic group based on their mitochondrial DNA. The maternal ancestor of the unisexual ambystomatids was most closely related to the streamside salamander, with the original hybridization likely occurring 2.4-3.9 million years ago,[2] making it the oldest known lineage of all-female vertebrates.[4] The hybridization was most probably with an A.laterale. All known unisexuals have at least one A. laterale genome[3] and this is thought to be essential for unisexuality. However, the A. laterale genome has been replaced several times, independently, in each of the lineages by matings with A.laterale.

Taxonomy[edit]

Phylogenetic tree showing relations among Ambystoma species and outgroups: For example, the sister taxon to Ambystoma macrodactylum is Ambystoma laterale, meaning they share a single common ancestor and are each other's closest living relatives.

The genera Dicamptodon and Rhyacotriton were formerly included in this family, but are now usually placed into their own families Dicamptodontidae and Rhyacotritonidae. In 2006, a large study of amphibian systematics [5] placed Dicamptodon back within Ambystomatidae, based on cladistic analysis. This has been accepted by the Center for North American Herpetology.

Rhyacosiredon used to be considered a separate genus within the family Ambystomatidae. However, cladistic analysis of the mole salamanders found the existence of Rhyacosiredon makes Ambystoma paraphyletic, since the species are more closely related to some Ambystoma species than those species are to others in Ambystoma. The stream-type morphology of these salamanders (which includes larvae and neotenes with short gills and thicker gular folds) may have led to their misclassification as a different genus.

The genus name Ambystoma is traditionally translated as "cup-mouth", but is actually nonsense. Johann Jakob von Tschudi, who described the genus, intended to call it Amblystoma, "blunt-mouth", However, he misspelled the genus as Ambystoma at many points throughout his description. Under biological naming rules, the misspelling takes precedence and cannot be changed. This is especially true because it was widely used by other authors. Occasionally, old specimens and documents will bear the intended genus name.[citation needed]

Species[edit]

This genus contains 32 species, listed below, the newest being A. bishopi. Terrestrial species are labeled with a "T", neotenic species are labeled with an "N", and species with established populations of both are labeled with a "V".

See also[edit]

References[edit]

  1. ^ a b Bi, Ke; James P Bogart; Jinzhong Fu (2008). "The prevalence of genome replacement in unisexual salamanders of the genus Ambystoma (Amphibia, Caudata) revealed by nuclear gene genealogy" (Open access). BMC Evolutionary Biology 8: 158. doi:10.1186/1471-2148-8-158. ISSN 1471-2148. PMC 2413238. PMID 18498635. Retrieved 2011-12-23. 
  2. ^ a b c d Bogart, James P; Ke Bi; Jinzong Fu; Daniel W A Noble; John Niedzwiecki (February 2007). "Unisexual salamanders (genus Ambystoma) present a new reproductive mode for eukaryotes". Genome / National Research Council Canada = Génome / Conseil National De Recherches Canada 50 (2): 119–136. doi:10.1139/g06-152. ISSN 0831-2796. PMID 17546077. Retrieved 2011-12-15. 
  3. ^ a b Bogart, J P; J Bartoszek; D W A Noble; K Bi (2009-07-29). "Sex in unisexual salamanders: discovery of a new sperm donor with ancient affinities". Heredity 103 (6): 483–493. doi:10.1038/hdy.2009.83. ISSN 0018-067X. PMID 19639004. 
  4. ^ Bi, Ke; James P Bogart (2010). "Time and time again: unisexual salamanders (genus Ambystoma) are the oldest unisexual vertebrates". BMC Evolutionary Biology 10: 238. doi:10.1186/1471-2148-10-238. ISSN 1471-2148. PMC 3020632. PMID 20682056. Retrieved 2011-12-23. 
  5. ^ (Frost et al., Bulletin of the American Museum of Natural History, 297 (2006)
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